PyDDM v0.1.0 documentation
  • Getting Started
  • Usage
    • What metadata to provide in the YAML file
  • Basic walkthrough
  • Advanced walkthrough
  • Adding a new DDM model
  • Probing intermittent dynamics
  • PyDDM
    • PyDDM.ISF_and_DDMmatrix_theoretical_models
      • PyDDM.ISF_and_DDMmatrix_theoretical_models.dTheoryBallistic_DDM
      • PyDDM.ISF_and_DDMmatrix_theoretical_models.dTheoryBallistic_ISF
      • PyDDM.ISF_and_DDMmatrix_theoretical_models.dTheoryDoubleExp_DDM
      • PyDDM.ISF_and_DDMmatrix_theoretical_models.dTheoryDoubleExp_ISF
      • PyDDM.ISF_and_DDMmatrix_theoretical_models.dTheoryExpAndBallistic_DDM
      • PyDDM.ISF_and_DDMmatrix_theoretical_models.dTheoryExpAndBallistic_ISF
      • PyDDM.ISF_and_DDMmatrix_theoretical_models.dTheoryPolydisperse_DDM
      • PyDDM.ISF_and_DDMmatrix_theoretical_models.dTheorySingleExp_DDM
      • PyDDM.ISF_and_DDMmatrix_theoretical_models.dTheorySingleExp_ISF
      • PyDDM.ISF_and_DDMmatrix_theoretical_models.dTheorySingleExp_Nonerg_DDM
      • PyDDM.ISF_and_DDMmatrix_theoretical_models.dTheorySingleExp_Nonerg_ISF
      • PyDDM.ISF_and_DDMmatrix_theoretical_models.dTheoryTwoBallistic_DDM
      • PyDDM.ISF_and_DDMmatrix_theoretical_models.dTheoryTwoBallistic_ISF
    • PyDDM.ddm_analysis_and_fitting
      • PyDDM.ddm_analysis_and_fitting.apply_binning
      • PyDDM.ddm_analysis_and_fitting.fit_report
      • PyDDM.ddm_analysis_and_fitting.get_tau_vs_q_fit
      • PyDDM.ddm_analysis_and_fitting.interactive_fit_inspection
      • PyDDM.ddm_analysis_and_fitting.newt
      • PyDDM.ddm_analysis_and_fitting.print_fitting_models
      • PyDDM.ddm_analysis_and_fitting.recalculate_ISF_with_new_background
      • PyDDM.ddm_analysis_and_fitting.save_fit_results_to_excel
      • PyDDM.ddm_analysis_and_fitting.Browse_DDM_Fits
      • PyDDM.ddm_analysis_and_fitting.DDM_Analysis
      • PyDDM.ddm_analysis_and_fitting.DDM_Fit
    • PyDDM.ddm_calc
      • PyDDM.ddm_calc.computeDDMMatrix
      • PyDDM.ddm_calc.determining_A_and_B
      • PyDDM.ddm_calc.execute_LSQ_fit
      • PyDDM.ddm_calc.execute_ScipyCurveFit_fit
      • PyDDM.ddm_calc.find_radial_average
      • PyDDM.ddm_calc.fit_ddm
      • PyDDM.ddm_calc.fit_ddm_all_qs
      • PyDDM.ddm_calc.generateLogDistributionOfTimeLags
      • PyDDM.ddm_calc.generate_mask
      • PyDDM.ddm_calc.get_FF_DDM_matrix
      • PyDDM.ddm_calc.get_MSD_from_DDM_data
      • PyDDM.ddm_calc.newt
      • PyDDM.ddm_calc.radial_avg_ddm_matrix
      • PyDDM.ddm_calc.temporalVarianceDDMMatrix
      • PyDDM.ddm_calc.window_function
      • PyDDM.ddm_calc.IPythonStreamHandler
    • PyDDM.fit_parameters_dictionaries
      • PyDDM.fit_parameters_dictionaries.extract_array_of_fixed_or_not
      • PyDDM.fit_parameters_dictionaries.extract_array_of_param_mins_maxes
      • PyDDM.fit_parameters_dictionaries.extract_array_of_parameter_values
      • PyDDM.fit_parameters_dictionaries.populate_intial_guesses
      • PyDDM.fit_parameters_dictionaries.populate_min_and_max_of_paramters
      • PyDDM.fit_parameters_dictionaries.return_parameter_names
      • PyDDM.fit_parameters_dictionaries.return_possible_fitting_models
      • PyDDM.fit_parameters_dictionaries.set_parameter_fixed
      • PyDDM.fit_parameters_dictionaries.set_parameter_guess_and_limits
      • PyDDM.fit_parameters_dictionaries.set_parameter_initial_guess
      • PyDDM.fit_parameters_dictionaries.set_parameter_limits
      • PyDDM.fit_parameters_dictionaries.turn_parameters_into_dataframe_for_display
    • PyDDM.utils
      • PyDDM.utils.create_two_time_correlation_matrix
      • PyDDM.utils.generate_pandas_data
      • PyDDM.utils.generate_pandas_table_fit_results
      • PyDDM.utils.get_schulz_dist
      • PyDDM.utils.get_velocity_variance
      • PyDDM.utils.newt
      • PyDDM.utils.plot_amplitude
      • PyDDM.utils.plot_amplitude_over_background
      • PyDDM.utils.plot_background
      • PyDDM.utils.plot_fraction
      • PyDDM.utils.plot_nonerg
      • PyDDM.utils.plot_one_tau_vs_q
      • PyDDM.utils.plot_schulz
      • PyDDM.utils.plot_stretching_exponent
      • PyDDM.utils.plot_to_inspect_fit
      • PyDDM.utils.plot_to_inspect_fit_2x2subplot
      • PyDDM.utils.view_colormap
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Python Module Index

p
 
p
- PyDDM
    PyDDM.ddm_analysis_and_fitting
    PyDDM.ddm_calc
    PyDDM.fit_parameters_dictionaries
    PyDDM.ISF_and_DDMmatrix_theoretical_models
    PyDDM.utils

By Ryan McGorty and Hannah Noor Verwei
© Copyright 2021, Ryan McGorty and Hannah Noor Verwei.