Index

A

acquire() (IPythonStreamHandler method)

addFilter() (IPythonStreamHandler method) apply_binning() (in module PyDDM.ddm_analysis_and_fitting)

B

Browse_DDM_Fits (class in PyDDM.ddm_analysis_and_fitting)

C

calculate_DDM_matrix() (DDM_Analysis method) close() (IPythonStreamHandler method) computeDDMMatrix() (in module PyDDM.ddm_calc)

create_two_time_correlation_matrix() (in module PyDDM.utils) createLock() (IPythonStreamHandler method) createTwoTimeCorr() (DDM_Analysis method)

D

DDM_Analysis (class in PyDDM.ddm_analysis_and_fitting) DDM_Fit (class in PyDDM.ddm_analysis_and_fitting) ddm_matrix_ballistic (in module PyDDM.fit_parameters_dictionaries) ddm_matrix_double_exponential (in module PyDDM.fit_parameters_dictionaries) ddm_matrix_exponential_ballistic (in module PyDDM.fit_parameters_dictionaries) ddm_matrix_single_exponential (in module PyDDM.fit_parameters_dictionaries) ddm_matrix_single_exponential_nonerg (in module PyDDM.fit_parameters_dictionaries) determining_A_and_B() (in module PyDDM.ddm_calc) dTheoryBallistic_DDM() (in module PyDDM.ISF_and_DDMmatrix_theoretical_models) dTheoryBallistic_ISF() (in module PyDDM.ISF_and_DDMmatrix_theoretical_models)

dTheoryDoubleExp_DDM() (in module PyDDM.ISF_and_DDMmatrix_theoretical_models) dTheoryDoubleExp_ISF() (in module PyDDM.ISF_and_DDMmatrix_theoretical_models) dTheoryExpAndBallistic_DDM() (in module PyDDM.ISF_and_DDMmatrix_theoretical_models) dTheoryExpAndBallistic_ISF() (in module PyDDM.ISF_and_DDMmatrix_theoretical_models) dTheoryPolydisperse_DDM() (in module PyDDM.ISF_and_DDMmatrix_theoretical_models) dTheorySingleExp_DDM() (in module PyDDM.ISF_and_DDMmatrix_theoretical_models) dTheorySingleExp_ISF() (in module PyDDM.ISF_and_DDMmatrix_theoretical_models) dTheorySingleExp_Nonerg_DDM() (in module PyDDM.ISF_and_DDMmatrix_theoretical_models) dTheorySingleExp_Nonerg_ISF() (in module PyDDM.ISF_and_DDMmatrix_theoretical_models) dTheoryTwoBallistic_DDM() (in module PyDDM.ISF_and_DDMmatrix_theoretical_models) dTheoryTwoBallistic_ISF() (in module PyDDM.ISF_and_DDMmatrix_theoretical_models)

E

emit() (IPythonStreamHandler method) execute_LSQ_fit() (in module PyDDM.ddm_calc) execute_ScipyCurveFit_fit() (in module PyDDM.ddm_calc)

extract_array_of_fixed_or_not() (in module PyDDM.fit_parameters_dictionaries) extract_array_of_param_mins_maxes() (in module PyDDM.fit_parameters_dictionaries) extract_array_of_parameter_values() (in module PyDDM.fit_parameters_dictionaries) extract_MSD() (DDM_Fit method)

F

filter() (IPythonStreamHandler method) find_alignment_factor() (DDM_Analysis method) find_alignment_factor_one_lagtime() (DDM_Analysis method) find_radial_average() (in module PyDDM.ddm_calc) fit() (DDM_Fit method)

fit_ddm() (in module PyDDM.ddm_calc) fit_ddm_all_qs() (in module PyDDM.ddm_calc) fit_report() (in module PyDDM.ddm_analysis_and_fitting) flush() (IPythonStreamHandler method) format() (IPythonStreamHandler method)

G

generate_fit_report() (DDM_Fit method) generate_mask() (in module PyDDM.ddm_calc) generate_pandas_data() (in module PyDDM.utils) generate_pandas_table_fit_results() (in module PyDDM.utils) generate_plots() (DDM_Analysis method)

generateLogDistributionOfTimeLags() (in module PyDDM.ddm_calc) get_FF_DDM_matrix() (in module PyDDM.ddm_calc) get_MSD_from_DDM_data() (in module PyDDM.ddm_calc) get_schulz_dist() (in module PyDDM.utils) get_tau_vs_q_fit() (in module PyDDM.ddm_analysis_and_fitting) get_velocity_variance() (in module PyDDM.utils)

H

handle() (IPythonStreamHandler method)

handleError() (IPythonStreamHandler method)

I

interactive_fit_inspection() (in module PyDDM.ddm_analysis_and_fitting) IPythonStreamHandler (class in PyDDM.ddm_calc) isf_ballistic (in module PyDDM.fit_parameters_dictionaries)

isf_double_exponential (in module PyDDM.fit_parameters_dictionaries) isf_exponential_ballistic (in module PyDDM.fit_parameters_dictionaries) isf_single_exponential (in module PyDDM.fit_parameters_dictionaries) isf_single_exponential_nonerg (in module PyDDM.fit_parameters_dictionaries)

L

lastind (Browse_DDM_Fits attribute) load_data() (DDM_Fit method)

loadYAML() (DDM_Analysis method) (DDM_Fit method)

M

module PyDDM PyDDM.ddm_analysis_and_fitting PyDDM.ddm_calc PyDDM.fit_parameters_dictionaries PyDDM.ISF_and_DDMmatrix_theoretical_models PyDDM.utils

N

newt() (in module PyDDM.ddm_analysis_and_fitting) (in module PyDDM.ddm_calc) (in module PyDDM.utils)

P

plot_amplitude() (in module PyDDM.utils) plot_amplitude_over_background() (in module PyDDM.utils) plot_background() (in module PyDDM.utils) plot_fraction() (in module PyDDM.utils) plot_nonerg() (in module PyDDM.utils) plot_one_tau_vs_q() (in module PyDDM.utils) plot_schulz() (in module PyDDM.utils) plot_stretching_exponent() (in module PyDDM.utils) plot_to_inspect_fit() (in module PyDDM.utils) plot_to_inspect_fit_2x2subplot() (in module PyDDM.utils) populate_intial_guesses() (in module PyDDM.fit_parameters_dictionaries) populate_min_and_max_of_paramters() (in module PyDDM.fit_parameters_dictionaries)

print_fitting_models() (in module PyDDM.ddm_analysis_and_fitting) PyDDM module PyDDM.ddm_analysis_and_fitting module PyDDM.ddm_calc module PyDDM.fit_parameters_dictionaries module PyDDM.ISF_and_DDMmatrix_theoretical_models module PyDDM.utils module

R

radial_avg_ddm_matrix() (in module PyDDM.ddm_calc) recalculate_ISF_with_new_background() (in module PyDDM.ddm_analysis_and_fitting) release() (IPythonStreamHandler method) reload_fit_model_by_name() (DDM_Fit method)

removeFilter() (IPythonStreamHandler method) resave_ddm_dataset() (DDM_Analysis method) return_parameter_names() (in module PyDDM.fit_parameters_dictionaries) return_possible_fitting_models() (in module PyDDM.fit_parameters_dictionaries)

S

save_fit_results_to_excel() (in module PyDDM.ddm_analysis_and_fitting) save_fits_disk() (DDM_Fit method) set_filename_for_saving() (DDM_Analysis method) set_parameter_bounds() (DDM_Fit method) set_parameter_fixed() (in module PyDDM.fit_parameters_dictionaries) set_parameter_guess_and_limits() (in module PyDDM.fit_parameters_dictionaries)

set_parameter_initial_guess() (DDM_Fit method) (in module PyDDM.fit_parameters_dictionaries) set_parameter_limits() (in module PyDDM.fit_parameters_dictionaries) setFormatter() (IPythonStreamHandler method) setLevel() (IPythonStreamHandler method) setStream() (IPythonStreamHandler method) setup() (DDM_Analysis method)

T

temporalVarianceDDMMatrix() (in module PyDDM.ddm_calc)

turn_parameters_into_dataframe_for_display() (in module PyDDM.fit_parameters_dictionaries)

U

use_parameters_provided() (DDM_Fit method)

V

variationInDDMMatrix() (DDM_Analysis method)

view_colormap() (in module PyDDM.utils)

W

window_function() (in module PyDDM.ddm_calc)